An updated list is also available on Google Scholar.
Publications prior to UW-Madison:
Vollheyde K†, Dudley QM†, Yang T, Oz MT, Mancinotti D, Fedi MO, Heavens D, Linsmith G, Chhetry M, Smedley MA, Harwood WA, Swarbreck D, Geu‐Flores F, Patron NJ “An improved Nicotiana benthamiana bioproduction chassis provides novel insights into nicotine biosynthesis” New Phytologist (2023) [weblink] († indicates equal contribution)
Tomaž S, Petek M, Lukan T, Pogačar K, Stare K, Prates ET, Jacobson DA, Zrimec J, Bajc G, Butala M, Novak MP, Dudley QM, Patron N, Taler-Verčič A, Usenik A, Turk D, Prat S, Coll A, Gruden K “A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors” Plant Physiology kiac579 (2022) [weblink]
Dudley QM, Jo S, Guerrero DAS, Chhetry M, Smedley MA, Harwood WA, Sherden NH, O’Connor SE, Caputi L, Patron NJ “Reconstitution of monoterpene indole alkaloid biosynthesis in genome engineered Nicotiana benthamiana” Communications Biology 5, 949 (2022) [weblink]
Dudley QM, Cai Y, Kallam K, Debreyne H, Carrasco-Lopez JA, Patron NJ “Biofoundry-assisted expression and characterization of plant proteins” Synthetic Biology (6)1 ysab029 (2021) [weblink]
Cai Y, Dudley QM, Patron NJ “Measurement of transgene copy number in plants by droplet digital PCR” Bio-protocol 11(13) e4075 (2021) [weblink]
Dudley QM, Karim AS, Nash CJ, Jewett MC “In vitro prototyping of limonene biosynthesis using cell-free protein synthesis” Metabolic Engineering 61, 251-260 (2020) [weblink]
Karim AS, Dudley QM, Juminaga A, Yuan Y, Crowe SA, Heggestad JT, Garg S, Abdalla T, Grubbe WS, Rasor BJ, Coar DN, Torculas M, Krein M, Liew F, Quattlebaum A, Jensen RO, Stuart JA, Simpson SD, Köpke M, Jewett MC “In vitro prototyping and rapid optimization of biosynthetic enzymes for cell design” Nature Chemical Biology 16, 912-919 (2020) [weblink]
†O’Kane PT, †Dudley QM, McMillan AK, Jewett MC, Mrksich M “High-throughput mapping of CoA metabolites by SAMDI-MS to optimize the cell-free biosynthesis of HMG-CoA” Science Advances 5(6) eaaw9180 (2019) [weblink] († indicates equal contribution)
Dudley QM, Nash CJ, Jewett MC “Cell-free biosynthesis of limonene using enzyme-enriched Escherichia coli lysates” Synthetic Biology 4(1) ysz003 (2019) [weblink]
Casini A, Chang FY, Eluere R, King AM, Young EM, Dudley QM, Karim A, Pratt K, Bristol C, Forget A, Ghodasara A, Warden-Rothman R, Gan R, Cristofaro A, Borujeni AE, Ryu MH, Li J, Kwon YC, Wang H, Tatsis E, Rodriguez-Lopez C, O’Connor SE, Medema MH, Fischbach MA, Jewett MC, Voigt CA, Gordon DB “A pressure test to make 10 molecules in 90 days: external evaluation of methods to engineer biology” Journal of the American Chemical Society 140(12), 4302-4316 (2018) [weblink]
Dudley QM, Anderson KC, Jewett MC “Cell-free mixing of Escherichia coli crude extracts to prototype and rationally engineer high-titer mevalonate synthesis” ACS Synthetic Biology 5(12), 1578-1588 (2016) [weblink]
Dudley QM, Karim AS, Jewett MC (review) “Cell-Free Metabolic Engineering: Biomanufacturing beyond the cell” Biotechnology Journal 10(1), 69-82 (2015) [weblink]
Dudley QM, Liska AJ, Watson AK, Erickson GE “Uncertainties in life cycle greenhouse gas emissions from US beef cattle” Journal of Cleaner Production 75, 31-39 (2014) [weblink]
Book chapters
Dudley QM, Raitskin O, Patron NJ (2022) “Cas9-mediated targeted mutagenesis in plants” in: “Plant Synthetic Biology. Methods in Molecular Biology” vol 2379. Zurbriggen M.D. editor Humana, New York, NY. DOI: 10.1007/978-1-0716-1791-5_1 [weblink]
Karim AS, Dudley QM, Jewett MC (2017) “Cell-free synthetic systems for metabolic engineering and biosynthetic pathway prototyping”, in “Industrial Biotechnology: Microorganisms” 125-148 Christoph Wittmann and James C. Liao, editors. Wiley Biotechnology Series. DOI: 10.1002/9783527807796.ch4
† equal contribution, * corresponding author, ◊ undergraduate student when conducting the research